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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015872931.1_cds_XP_016434946.1_30958
CDS Infomation

[gene=LOC107761253] [db_xref=GeneID:107761253] [protein=polygalacturonase At1g48100-like] [protein_id=XP_016434946.1] [location=complement(join(19846..20347,21083..21164,21594..21801,22111..22155,22597..22764,23398..23826))] [gbkey=CDS]
Sequence

ATGGAGATACTTCGCTTATTATGGTTTACTATTATGTTGTTATTCTTTAGTCATTTAATC
AATGTAGAAGGAAGACATCATTTTTCCAAGAAACCAAAGAGCAAAAATATTAGTTATGCT
CCTAGTCCTGTTGATGTTCATGTTGATGAACAACCACCAGCTTCTTCTCCTGCTAGTAAT
GTTGTTCCGTCGGACCCGAGTTACGGAGGTCCTGCTGGTTCGACTAATTCAGATTCTGGT
TGCGTTTTCGACGTGACTGAGTATGGAGCCATAGGAGATGGCTCAACGGATGACACTGAT
GCATTCAGAGCTGCTTGGAAAGAAGCATGTCAAGTTGAATCAGCTGTGGTTTTAGCTCCA
GCTGACCATGTTTTTATGATCACTTCTACCATTTTCTCTGGCCCTTGTAAACCTGGACTT
GAATTTCAAGTAAATGGGATCCTAATGCCACCAGATGGACCAGATTGTTGGCCAAAAGAA
GATAGTAACAAGCAATGGCTTGTGTTTTACCGACTTGATAATATGACTTTTACCGGCACT
GGTACTATTGAAGGTAACGGTGAAAAATGGTGGGAATTACCTTGCAAACCTCATAGGGGA
CCTAATGGCTCAACTTTACCTGGACCATGTGATAGCCCTGCTATGATAAGGTTTTTCATG
AGCTCAAATTTGGTGGTGAGAGGTTTAAGAATACAAAACAGTCCAATGTTCCACATGAAA
TTTGATGGGTGTGAAGGAGTATTAATTGACCAATTGTCAATTTCTTCCCCTAAACTTAGC
CCAAACACCGATGGAATTCACATTGAGAACACCAAGTCCGTGGGAATCTACAACTCCGTT
ATAGCCAATGGCGATGATTGTATATCAATTGGACCTGGCAGTTCAAACGTTGATATTGAA
GCCGTCACATGTGGGCCCAGTCACGGGATCAGCATTGGGAGCCTAGGGGTGCACCATAGC
CAGGCATGTGTATCAAACATAACAGTCCGGAACGCCATAATACGAGACTCAGACAACGGA
GTAAGAATAAAAACATGGCAAGGAGGATCAGGATCAGTAACAGGATTATCATTCGACACA
ATTCAAATGGAAAATGTGCGCAACTGCATAATCATAGACCAATATTACTGCATGACAAAA
GGCTGTCAAAACGAAACATCTGCAGTTTGTGTTAAAGACATCTCGTACAGGAACATTAAA
GGCACGTACGATGTTAGAAGTGCTCCAATTCACTTTGCCTGTAGTGATACCATTGCCTGT
ACTAATATTACAATGTCTGAAGTTGAACTTCTTCCACACGAAGGCGAGCTTGTCGATGAT
CCTTTCTGTTGGAACGCGTATGGGATTCAACAAACGTTAACGATACCTCCAATTGATTGT
TTACAAGATGGAATGCCTCAGTCAATTGGTGAGGATGCATATACCTGCAGCTGA

Peptide Sequence

PEP ID

XP_016434946.1
PEP Infomation

PREDICTED: polygalacturonase At1g48100-like [Nicotiana tabacum]
Sequence

MEILRLLWFTIMLLFFSHLINVEGRHHFSKKPKSKNISYAPSPVDVHVDEQPPASSPASN
VVPSDPSYGGPAGSTNSDSGCVFDVTEYGAIGDGSTDDTDAFRAAWKEACQVESAVVLAP
ADHVFMITSTIFSGPCKPGLEFQVNGILMPPDGPDCWPKEDSNKQWLVFYRLDNMTFTGT
GTIEGNGEKWWELPCKPHRGPNGSTLPGPCDSPAMIRFFMSSNLVVRGLRIQNSPMFHMK
FDGCEGVLIDQLSISSPKLSPNTDGIHIENTKSVGIYNSVIANGDDCISIGPGSSNVDIE
AVTCGPSHGISIGSLGVHHSQACVSNITVRNAIIRDSDNGVRIKTWQGGSGSVTGLSFDT
IQMENVRNCIIIDQYYCMTKGCQNETSAVCVKDISYRNIKGTYDVRSAPIHFACSDTIAC
TNITMSEVELLPHEGELVDDPFCWNAYGIQQTLTIPPIDCLQDGMPQSIGEDAYTCS

Transcript Sequence

Gene sequence data has not been registered.